Since Rob has committed his precipitation spatial interpolation, the 2D_interpolation reference result had to be updated. Several members in filter classes could be made const/static/private.

Some "TODO" have been removed, a missing check has been added in Interpol1D:linRegression (at least 2 valid points are required), type inconsistencies have been fixed in FilterTukey and ProcessinStack. However using size_t for the meteo parameter index is not necessarily a good idea and this will require a careful review.

The median computations were relying on std::nth_element and wrongly assuming that the output would be sorted. This is non-standard behavior and is not the case with more recent versions of the STL. This has been fixed.

The ProcessingStack constructor has been optimized by using new methods of Config to remove some now redundant code.

In order to implement an efficient and portable object serialization, it has been decided that all serializable objects would be manually serialized to an std::iostream. Then, the parallelization framework (mpi, popc, etc) can take over this stream and move it to another node. Therefore, the operators "<<" and ">>" are now reserved for serialization (as seems to be standard) and the debug outputs are obtained by printing "object.toString()". This means that all debug code has potentially to be fixed, by replacing "std::cout << object" by "std::cout << object.toString()".

Lots of vectors copies were made using push_back(). This is definitely not efficient! This has been replaced by vec_o = vec_i, we will see which impact it has on performances...

My previous commit was terrible... it simply made it impossible to define optional keys. This has now been fixed but required a change in the API. So, don't use Config::nothrow but IOUtils::nothrow instead.

In order to try to be closer to the spirit of the STL, now the empty strings/vectors/lists are tested with .empty(), the first/last elements of vectors accessed with front()/back(), the empty strings are not contructed with string("") but with string(), etc This makes a benchmark based on meteo_reading ~4% faster and this makes the code suprisingly easier to read. 

Some extra constification took place as well as some minor code cleanup (optimizing the comparison between two vectors in order to perform less tests, etc).

The Date class can now properly generate and parse full ISO timestamps, including time zone information. The full specification is now supported by convertString() with a helper method in the Date class. Ouputing an ISO string with its time zone is done by requesting the ISO_TZ format.

New warnings have been tried to detect variable shadowing (one variable declared with the same name as another one), alignement issues, etc. This produces very verbose output (not all warnings are legitimate) but allowed to fix lots of cases of misalignement and shadowing issues. These options have been left in the CMakeLists but NOT enabled (since these warnings are not so easy to interpret).

The last filters that had not been ported to the new filtering infrastructure have been ported and their documentation updated. All filters now use window specifications (instead of vector of pointers). The misleading filter argument "index" (for parameter type) has been renamed as "param" for all filters. The use of "unsigned int" for looping over vectors has been replaced by "size_t". The old "soft" behavior for the filters has been restored (ie: if not soft, a point that can not be checked by the filter is deleted).

A few more "consts" have been added.

The Passive_T filter has been reworked and renamed as ProcPassiveT. A proper documentation has been written for it.

All the cout have been replaced by cerr in order to avoid messing with the end user's application. Some old commented out code has been removed.

Another fix/enhancement for POPC: the libraries now ends with "popc" in the popc version, as the autotools build was doing.

Windchill and heat index have been implemented in Atmosphere.

Some cleanup in the filters, some code moved to ProcessingBlock, so that elements that are not filters can inherit ProcessingBlock and get all that it needs. A processing element has been implemented to multiply by a given constant, another one to add a given offset and another one to correct precipitation for undercatch.

Some invalid doxygen comments have been fixed in MathOptim.

Performance boost: Redesign of class MeteoData. The individual public double members like tss, ta, rh have been removed and instead of the rather complicated internal representation with the help of std::map and pointers, the MeteoData object now holds all its important information in one double vector (meteo data) and one string vector (parameter names). Thus the overloaded copy constructor could be slashed radically. This leads to huge performance gains, especially when dealing with huge vectors of MeteoData (which are needed for filtering, resampling, etc).

Furthermore the access to the meteo parameters has been simpleified by overloading the operator(), replacing the old .param(size_t index) and .param(string paramname) functions:

MeteoData md;
double ta = md(MeteoData::TA);

OR

double ta = md("TA");

These changes were propagated into all of MeteoIO.

The WIND_AVG filter has been ported. The problem is that it is not possible to get at the same time VW and DW. This will have to be fixed later... 

More documentation has been written. 

The full support for timezones has been brought back. This fixes issue 71. The SMET, SMET, IMIS, BORMA plugins have been validated. Geotop should be validtaed if an input data set is available. A new class will have to be implemented to represent time periods. This is currently only a typedef pointing to the Date class, but a specific class would be welcomed.

GSN has been fixed for some changes on the web service, but does not retrieve the correct timestamps (is this a GSN issue?). The GSN compilation has been improved: the warnings related to GSOAP have been removed. 

A new long wave radiaiton model using cloudiness as input has been added (Omstedt, 1990). 

The min and max filters have been implemented. The "how to write a filter" documentation page has been updated to relfect the latest changes. The operator << has been implemented for various objects involved in the data processing.

Fixed a bug in the IOManager: before resampling data we simply read it through the getMeteoData function of the IOManager.

New filter system rolled out with currently two filters up and running: min_max and mean_avg (without the soft option, only left or right centering). The new filter system is built upon processing blocks that take a vector<MeteoData> as input and return a processed vector<MeteoData>. The individual filters are stacked in a ProcessingStack where they are invoked sequentially.