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/***********************************************************************************/
/*  Copyright 2009 WSL Institute for Snow and Avalanche Research    SLF-DAVOS      */
/***********************************************************************************/
/* This file is part of MeteoIO.
    MeteoIO is free software: you can redistribute it and/or modify
    it under the terms of the GNU Lesser General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    MeteoIO is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU Lesser General Public License for more details.

    You should have received a copy of the GNU Lesser General Public License
    along with MeteoIO.  If not, see <http://www.gnu.org/licenses/>.
*/
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#include <meteoio/plugins/libsmet.h>
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#include <errno.h>
#include <string.h>
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#include <limits>
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#include <cmath>
#include <cstdlib>
#include <sstream>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <algorithm>
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#if defined _WIN32 || defined __MINGW32__
	#include <windows.h>
#else
	#include <sys/stat.h>
#endif

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using namespace std;

namespace smet {

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const char* SMETCommon::smet_version = "1.1";
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set<string> SMETCommon::all_mandatory_header_keys = set<std::string>();
set<string> SMETCommon::all_optional_header_keys  = set<std::string>();
set<string> SMETCommon::all_decimal_header_values = set<std::string>();

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SMETException::SMETException(const std::string& message, const std::string& position)
              : msg( (position.empty())? "At unknown position: " + message : position + ": " + message) {}
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SMETException::~SMETException() throw() {}

const char* SMETException::what() const throw()
{
	return msg.c_str();
}

const bool SMETCommon::__init = SMETCommon::initStaticData();
bool SMETCommon::initStaticData()
{
	all_mandatory_header_keys.insert("station_id");
	all_mandatory_header_keys.insert("nodata");
	all_mandatory_header_keys.insert("fields");

	all_optional_header_keys.insert("latitude");
	all_optional_header_keys.insert("longitude");
	all_optional_header_keys.insert("altitude");
	all_optional_header_keys.insert("easting");
	all_optional_header_keys.insert("northing");
	all_optional_header_keys.insert("epsg");

	all_optional_header_keys.insert("station_name");
	all_optional_header_keys.insert("tz");
	all_optional_header_keys.insert("creation");
	all_optional_header_keys.insert("source");
	all_optional_header_keys.insert("units_offset");
	all_optional_header_keys.insert("units_multiplier");
	all_optional_header_keys.insert("comment");

	all_decimal_header_values.insert("nodata");
	all_decimal_header_values.insert("latitude");
	all_decimal_header_values.insert("longitude");
	all_decimal_header_values.insert("altitude");
	all_decimal_header_values.insert("easting");
	all_decimal_header_values.insert("northing");
	all_decimal_header_values.insert("epsg");
	all_decimal_header_values.insert("tz");

	return true;
}

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#if defined _WIN32 || defined __MINGW32__
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bool SMETCommon::fileExists(const std::string& filename)
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{
	const DWORD attributes = GetFileAttributes( filename.c_str() );
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	if (attributes==INVALID_FILE_ATTRIBUTES || attributes==FILE_ATTRIBUTE_VIRTUAL
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	     || attributes==FILE_ATTRIBUTE_DIRECTORY || attributes==FILE_ATTRIBUTE_DEVICE)
		return false;
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	return true;
}
#else
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bool SMETCommon::fileExists(const std::string& filename)
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{
	struct stat buffer ;

	if ((stat( filename.c_str(), &buffer))!=0) {//File exists if stat returns 0
		return false;
	}
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	if (S_ISREG(buffer.st_mode) || S_ISFIFO(buffer.st_mode) || S_ISLNK(buffer.st_mode))
		return true;
	else
		return false; //exclude char device, block device, sockets, etc
}
#endif

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bool SMETCommon::validFileAndPath(const std::string& filename)
{
#if defined _WIN32 || defined __MINGW32__ || defined __CYGWIN__
	const size_t startpos = filename.find_first_not_of(" \t\n"); // Find the first character position after excluding leading blank spaces
	const size_t invalid_char = filename.find_first_of("\000*:<>?|"); //find possible invalid characters
#else
	const size_t startpos = filename.find_first_not_of(" \t\n"); // Find the first character position after excluding leading blank spaces
	const size_t invalid_char = filename.find_first_of("\000"); //find possible invalid characters
#endif
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	if ((startpos!=0) || (invalid_char!=std::string::npos) || (filename==".") || (filename=="..")) {
		return false;
	}
	return true;
}

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void SMETCommon::copy_file(const std::string& src, const std::string& dest)
{
	if (src == dest) return; //copying to the same file doesn't make sense, but is no crime either

	if (!fileExists(src)) throw SMETException("File '"+src+"' does not exist", AT);
	std::ifstream fin(src.c_str(), std::ios::binary);
	if (fin.fail()) throw SMETException("Failed to open file '"+src+"'", AT);

	if (!validFileAndPath(dest)) throw SMETException("Destination file name '"+dest+"' is invalid", AT);
	std::ofstream fout(dest.c_str(), std::ios::binary);
	if (fout.fail()) {
		fin.close();
		throw SMETException("Failed to open destination file '"+dest+"'", AT);
	}

	fout << fin.rdbuf();

	fin.close();
	fout.close();
}

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double SMETCommon::convert_to_double(const std::string& in_string)
{
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	char* conversion_end = NULL;
	const double conversion_value = strtod(in_string.c_str(), &conversion_end);
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	if (*conversion_end == '\0') {
		return conversion_value;
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	} else {
		throw SMETException("Value \"" + in_string + "\" cannot be converted to double", SMET_AT);
	}
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}

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int SMETCommon::convert_to_int(const std::string& in_string)
{
	istringstream ss(in_string);
	int value;
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	if (!(ss >> value)) throw SMETException("Value \"" + in_string + "\" cannot be converted to int", SMET_AT);
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	return value;
}

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void SMETCommon::trim(std::string& str)
{
	const std::string whitespaces(" \t\f\v\n\r");
	const size_t startpos = str.find_first_not_of(whitespaces); // Find the first character position after excluding leading blank spaces
	const size_t endpos = str.find_last_not_of(whitespaces); // Find the first character position from reverse af

	// if all spaces or empty return an empty string
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	if (( std::string::npos == startpos ) || ( std::string::npos == endpos)) {
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		str.clear();
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	} else {
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		str.erase(endpos+1); //right trim
		str.erase(0, startpos); //left trim
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	}
}

bool SMETCommon::readKeyValuePair(const std::string& in_line, const std::string& delimiter,
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                                  std::map<std::string,std::string>& out_map)
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{
	//size_t pos = in_line.find(delimiter); //first occurence of '='

	size_t pos = std::string::npos;
	if ((delimiter==" ") || (delimiter=="\t")) {
		pos = in_line.find_first_of(" \t", 0);
	} else {
		pos = in_line.find(delimiter); //first occurence of '='
	}


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	if (pos != std::string::npos) { //ignore in_lines that are empty or without '='
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		std::string key = in_line.substr(0, pos);
		std::string value = in_line.substr(pos + 1);

		SMETCommon::trim(key);
		SMETCommon::trim(value);

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		if (key.empty() || value.empty()) {
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			return false;
		}

		out_map[key] = value;
	} else {
		return false;
	}

	return true;
}

void SMETCommon::stripComments(std::string& str)
{
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	const size_t found = str.find_first_of("#;");
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	if (found != std::string::npos){
		str.erase(found); //rest of line disregarded
	}
}

void SMETCommon::toUpper(std::string& str)
{
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	std::transform(str.begin(), str.end(),str.begin(), ::toupper);
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}

char SMETCommon::getEoln(std::istream& fin)
{
	std::streambuf* pbuf;
	char tmp = '0';
	int chars = 0;

	const std::streampos position = fin.tellg();

	do {
		fin.get(tmp);
		chars++;

		if ((tmp == '\r') || (tmp == '\n')) {
			char peekc = tmp;
			while ((!fin.eof() && ((peekc=='\r') || (peekc=='\n')))) {
				tmp = peekc;
				fin.get(peekc);
				chars++;
			}
			pbuf = fin.rdbuf();
			pbuf->pubseekpos(position); //rewind
			fin.clear(); //reset eof flag, etc
			return tmp;
		}
	} while ((chars < 3000) && (!fin.eof()));

	pbuf = fin.rdbuf();
	pbuf->pubseekpos(position); //rewind
	fin.clear(); //reset eof flag, etc

	return '\n';
}

bool SMETCommon::is_decimal(const std::string& value)
{
	istringstream ss(value);
	double doublevalue;
	if (!(ss >> doublevalue)) return false;

	return true;
}

size_t SMETCommon::readLineToVec(const std::string& line_in, std::vector<std::string>& vec_string)
{
	vec_string.clear();
	std::istringstream iss(line_in); //construct inputstream with the string line as input

	std::string tmp_string;
	while (!iss.eof()) {
		iss >> std::skipws >> tmp_string;

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		if (!tmp_string.empty()) {
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			vec_string.push_back( tmp_string );
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		}
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		tmp_string.clear();
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	}

	return vec_string.size();
}

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////////////////////////////////////////////////////////////
//// SMETWriter class
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SMETWriter::SMETWriter(const std::string& in_filename, const SMETType& in_type)
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           : other_header_keys(), ascii_precision(), ascii_width(), header(), mandatory_header_keys(),
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             filename(in_filename), nodata_string(), smet_type(in_type), nodata_value(-999.), nr_of_fields(0),
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             julian_field(0), timestamp_field(0), location_wgs84(0), location_epsg(0),
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             location_in_header(false), location_in_data_wgs84(false), location_in_data_epsg(false),
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             timestamp_present(false), julian_present(false), file_is_binary(false), append_mode(false), append_possible(false) {}
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//what the caller MUST provide: 
//	* the fields header (for checks)
//	* the ascii width and precision
//	* nodata_value provided through set_header_value() calls
//HACK: the multipliers and offsets are not handled yet...
//for now, we do the most basic append: all the data after the first insertion point is deleted
SMETWriter::SMETWriter(const std::string& in_filename, const std::string& in_fields, const double& in_nodata)
           : other_header_keys(), ascii_precision(), ascii_width(), header(), mandatory_header_keys(),
             filename(in_filename), nodata_string(), smet_type(ASCII), nodata_value(in_nodata), nr_of_fields(0),
             julian_field(0), timestamp_field(0), location_wgs84(0), location_epsg(0),
             location_in_header(false), location_in_data_wgs84(false), location_in_data_epsg(false),
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             timestamp_present(false), julian_present(false), file_is_binary(false), append_mode(true), append_possible(false)
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{
	SMETReader reader(filename);
	smet_type = (reader.isAscii)? ASCII : BINARY;
	nodata_string = reader.get_header_value("nodata");
	//nodata_value = reader.nodata_value; //we trust the value provided to the constructor
	
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	nr_of_fields = reader.nr_of_fields; //in SMETReader, this does NOT contain the timestamp
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	julian_field = reader.julian_field;
	timestamp_field = reader.timestamp_field;
	timestamp_present = reader.timestamp_present;
	julian_present = reader.julian_present;
	
	location_wgs84 = reader.location_wgs84;
	location_epsg = reader.location_epsg;
	location_in_header = reader.location_in_header(WGS84) || reader.location_in_header(EPSG);
	location_in_data_wgs84 = reader.location_in_data(WGS84);
	location_in_data_epsg = reader.location_in_data(EPSG);
	
	//check that the fields match
	std::vector<std::string> vecFields;
	SMETCommon::readLineToVec(in_fields, vecFields);
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	if (timestamp_present) {
		if (vecFields[timestamp_field]!="timestamp") {
			std::ostringstream ss;
			ss << "Timestamp should be in field at position " << timestamp_field << "when  appending data to file '" << filename << "' but instead '" << reader.get_field_name(timestamp_field) << "' was found";
			throw SMETException(ss.str(), AT);
		}
		vecFields.erase( vecFields.begin()+timestamp_field );
	}
	if (julian_present) {
		if (vecFields[julian_field]!="julian") {
			std::ostringstream ss;
			ss << "Julian should be in field at position " << julian_field << "when  appending data to file '" << filename << "' but instead '" << reader.get_field_name(julian_field) << "' was found";
			throw SMETException(ss.str(), AT);
		}
		vecFields.erase( vecFields.begin()+julian_field );
	}
	
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	if (nr_of_fields!=vecFields.size()) {
		std::ostringstream ss;
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		ss << "Trying to append " << vecFields.size() << " fields in existing file '" << filename << "' that has " << nr_of_fields << " fields";
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		throw SMETException(ss.str(), AT);
	}
	for (size_t ii=0; ii<nr_of_fields; ii++) {
		if (vecFields[ii] != reader.get_field_name(ii)) {
			std::ostringstream ss;
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			ss << "Trying to append field '" << vecFields[ii] << "' at position " << ii << " in existing file '" << filename << "' when it should be '" << reader.get_field_name(ii);
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			throw SMETException(ss.str(), AT);
		}
	}
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	//adjust the number of fields to reflect the potential presence of timestamp and julian
	if (timestamp_present) nr_of_fields++;
	if (julian_present) nr_of_fields++;
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}
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const std::string SMETWriter::toString() const {
	ostringstream os;
	os << "<SMETWriter>\n";
	os << "\tfilename: " << filename << "\n";
	os << "\ttype: " << ((smet_type==ASCII)? "Ascii" : "Binary") << " append_mode: " << std::boolalpha << append_mode << " append_possible: " << append_possible << "\n";
	os << "\ttimestamp_present: " << timestamp_present << " field: " << timestamp_field << " julian_present: " << julian_present << " field: " << julian_field << "\n";
	os << "\tlocation: in header? " << location_in_header << " in data_wgs84? " << location_in_data_wgs84 << " in data_epsg? " << location_in_data_epsg << "\n";
	os << "\tlocation_wgs84: " << location_wgs84 << " location_epsg: " << location_epsg << "\n";
	os << "\tnodata: " << nodata_value << " = \"" << nodata_string << "\"\n";
	os << "\tnr_of_fields: " << nr_of_fields << "\n";
	os << "</SMETWriter>\n";
	return os.str();
}

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void SMETWriter::set_header_value(const std::string& key, const double& value)
{
	//check if key is decimal, transform to string and add to header
	if (SMETCommon::all_decimal_header_values.find(key) != SMETCommon::all_decimal_header_values.end()){
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		ostringstream ss;
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		if ((key == "latitude") || (key == "longitude") || (key == "easting") || (key == "northing")){
			ss << fixed << setprecision(6) << value;
		} else if (key == "altitude"){
			ss << fixed << setprecision(1) << value;
		} else if ((key == "epsg") || (key == "tz")){
			ss << fixed << setprecision(0) << value;
		} else {
			ss << value; //for nodata
		}

		set_header_value(key, ss.str());
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	} else { //It's a non-standard header value
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		ostringstream ss;
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		ss << value; //for nodata
		set_header_value(key, ss.str());
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	}
}

void SMETWriter::set_header_value(const std::string& key, const std::string& value)
{
	//check if header key/value pair is valid
	if (valid_header_pair(key, value)){
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		header[key] = value;
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		if ((SMETCommon::all_optional_header_keys.find(key) == SMETCommon::all_optional_header_keys.end())
		    && (SMETCommon::all_mandatory_header_keys.find(key) == SMETCommon::all_mandatory_header_keys.end()))
			other_header_keys.push_back(key);
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	} else {
		throw SMETException("Invalid, inconsistent or unknown key/value pair: " + key + " = " + value, SMET_AT);
	}
}

bool SMETWriter::valid_header_pair(const std::string& key, const std::string& value)
{
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	bool key_ok = true;
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	if (SMETCommon::all_mandatory_header_keys.find(key) != SMETCommon::all_mandatory_header_keys.end()){
		mandatory_header_keys.insert(key);
		key_ok = true;
	}

	//nodata value needs extra treatment
	if (key == "nodata"){
		istringstream ss(value);
		if (!(ss >> nodata_value)) return false;
		nodata_string = value;
	}

	//Using WGS_84 coordinate system
	if (key == "latitude")  location_wgs84 |= 1;
	else if (key == "longitude") location_wgs84 |= 2;
	else if (key == "altitude")  location_wgs84 |= 4;

	//Using an EPSG coordinate system
	if (key == "easting")  location_epsg |= 1;
	else if (key == "northing") location_epsg |= 2;
	else if (key == "altitude") location_epsg |= 4;
	else if (key == "epsg")     location_epsg |= 8;

	//Now do some value checks
	if (key == "epsg"){
		istringstream ss(value);
		int intvalue;
		if (!(ss >> intvalue)) return false;
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	}
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	if (SMETCommon::all_decimal_header_values.find(key) != SMETCommon::all_decimal_header_values.end()){
		//check if value is a double value
		if (!SMETCommon::is_decimal(value)) return false;
	}

	if ((location_epsg == 15) || (location_wgs84 == 7))
		location_in_header = true;

	//Rudimentary check on keys: fields, units_offset, units_multiplier
	if ((key == "fields") || (key == "units_offset") || (key == "units_multiplier"))
		key_ok = check_fields(key, value);

	return key_ok;
}

bool SMETWriter::check_fields(const std::string& key, const std::string& value)
{
	vector<string> tmp_vec;
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	const size_t counter = SMETCommon::readLineToVec(value, tmp_vec);
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	//Firstly: Check if number of fields is consistent
	if (nr_of_fields != 0){
		if (counter != nr_of_fields) return false;
	} else {
		nr_of_fields = counter;
	}
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	if (key == "fields"){
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		size_t count_wgs84 = 0, count_epsg = 0;
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		//check if location is in data and if timestamp is present
		for (size_t ii = 0; ii<tmp_vec.size(); ii++){
			if (tmp_vec[ii] == "latitude") count_wgs84++;
			else if (tmp_vec[ii] == "longitude") count_wgs84++;
			else if (tmp_vec[ii] == "easting") count_epsg++;
			else if (tmp_vec[ii] == "northing") count_epsg++;

			if (tmp_vec[ii] == "altitude") {
				count_wgs84++;
				count_epsg++;
			}

			if (tmp_vec[ii] == "timestamp"){
				if (timestamp_present) return false; //no duplicate timestamp field allowed
				timestamp_present = true;
				timestamp_field = ii;
			}

			if (tmp_vec[ii] == "julian"){
				if (julian_present) return false; //no duplicate julian field allowed
				julian_present = true;
				julian_field = ii;
			}
		}

		if (count_wgs84 == 3)
			location_in_data_wgs84 = true;

		if (count_epsg == 3)
			location_in_data_epsg = true;
	} else {
		//every value in units_offset and units_multiplier must be a decimal
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		for (vector<string>::const_iterator it = tmp_vec.begin(); it != tmp_vec.end(); ++it)
520
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531
			if (!SMETCommon::is_decimal(*it)) return false;
	}

	return true;
}

bool SMETWriter::valid_header()
{
	if (mandatory_header_keys.size() != 3)
		return false;

	if (location_in_data_epsg){ //EPSG code must be in the header anyway
532
		const map<string,string>::const_iterator it = header.find("epsg");
533
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		if (it == header.end()){
			return false;
		} else {
			return true;
		}
	}

	if (location_in_header || location_in_data_wgs84)
		return true;

	return false;
}

void SMETWriter::write(const std::vector<std::string>& vec_timestamp, const std::vector<double>& data)
{
548
549
	if (!SMETCommon::validFileAndPath(filename)) throw SMETException("Invalid file name \""+filename+"\"", AT);
	errno = 0;
550
	
551
	ofstream fout;
552
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558
559
560
	if (append_mode) {
		if (!append_possible) {
			//check where to insert the new data
			SMETReader reader(filename);
			const std::string last_timestamp = reader.getLastTimestamp();
			if (last_timestamp.empty() || last_timestamp>=vec_timestamp[0])
				reader.truncate_file(vec_timestamp[0]);
			append_possible = true;
		}
561
		fout.open(filename.c_str(), ios::binary | ofstream::app);
562
563
		if (fout.fail())
			throw SMETException("Error opening file \"" + filename + "\" for writing, possible reason: " + std::string(strerror(errno)), SMET_AT);
564
	} else { //normal mode
565
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		if (!append_possible) { //first write -> overwrite potential previous content
			fout.open(filename.c_str(), ios::binary);
567
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571
			if (fout.fail())
				throw SMETException("Error opening file \"" + filename + "\" for writing, possible reason: " + std::string(strerror(errno)), SMET_AT);
			write_header(fout); //Write the header info, always in ASCII format
			append_possible = true; //now all other calls to "open" will be in append mode
		} else { //after the first write: append
572
			fout.open(filename.c_str(), ios::binary | ofstream::app);
573
574
575
			if (fout.fail())
				throw SMETException("Error opening file \"" + filename + "\" for writing, possible reason: " + std::string(strerror(errno)), SMET_AT);
		}
576
	}
577
	
578
	if (vec_timestamp.empty() || data.empty() || nr_of_fields == 0) {//the header has been written, nothing to add
579
		fout.close();
580
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		return;
	}

583
584
	if (!timestamp_present) {
		fout.close();
585
		throw SMETException("No timestamp present when writing file \""+filename+"\", use write(const vector<double>& data)", SMET_AT);
586
	}
587
588

	const size_t nr_of_data_fields = nr_of_fields - 1;
589
	if (nr_of_fields<=1) { //avoid division by zero in the next block
590
		cerr << "[W] Attempting to write a dataset that contains no fields to file \"" + filename + "\"!\n";
591
		fout.close();
592
		return;
593
	}
594

595
	const size_t nr_of_lines = data.size() / (nr_of_fields-1);
596
597
	if ((nr_of_lines != vec_timestamp.size()) || ((data.size() % (nr_of_fields-1)) != 0)) {
		fout.close();
598
		ostringstream os;
599
		os << "Inconsistency between the number of timestamp (" << vec_timestamp.size() << ")  and number of data points (" << data.size() << " for " << nr_of_fields-1 << " fields) detected for file \""+filename+"\", recheck your data";
600
		throw SMETException(os.str(), SMET_AT);
601
	}
602

603
	std::vector<double> current_data(nr_of_fields-1);
604
605
	check_formatting();

606
607
	if (smet_type == ASCII) {
		for (size_t ii=0; ii<nr_of_lines; ii++) {
608
			const size_t offset = ii*(nr_of_fields-1);
609
			if (!data.empty())
610
				copy(data.begin()+offset, data.begin()+offset+nr_of_data_fields, current_data.begin());
611
			write_data_line_ascii(vec_timestamp[ii], current_data, fout);
612
613
		}
	} else {
614
		fout.close();
615
		throw SMETException("Cannot write binary file \""+filename+"\" with a timestamp, use julian instead", SMET_AT);
616
617
	}

618
	fout.close();
619
620
621
622
}

void SMETWriter::write(const std::vector<double>& data)
{
623
624
	if (!SMETCommon::validFileAndPath(filename)) throw SMETException("Invalid file name \""+filename+"\"", AT);
	errno = 0;
625
	std::ofstream fout;
626
	fout.open(filename.c_str(), ios::binary);
627
	if (fout.fail()) {
628
		ostringstream ss;
629
		ss << "Error opening file \"" << filename << "\" for writing, possible reason: " << strerror(errno);
630
631
		throw SMETException(ss.str(), SMET_AT);
	}
632

633
	write_header(fout); //Write the header info, always in ASCII format
634
635

	if (nr_of_fields == 0){
636
		fout.close();
637
638
639
		return;
	}

640
	const size_t nr_of_lines = data.size() / nr_of_fields;
641
642
	if ((data.size() % nr_of_fields) != 0) {
		fout.close();
643
		throw SMETException("Inconsistency between data and header fields detected in file \""+filename+"\", recheck your data", SMET_AT);
644
	}
645

646
	std::vector<double> current_data(nr_of_fields);
647
648
649
650
	check_formatting();

	if (smet_type == ASCII){
		for (size_t ii=0; ii<nr_of_lines; ii++){
651
			if (!data.empty())
652
				copy(data.begin()+ii*nr_of_fields, data.begin()+ii*nr_of_fields+nr_of_fields, current_data.begin());
653
			write_data_line_ascii("0000-01-01T00:00", current_data, fout); //dummy time
654
655
656
		}
	} else {
		for (size_t ii=0; ii<nr_of_lines; ii++){
657
			if (!data.empty())
658
				copy(data.begin()+ii*nr_of_fields, data.begin()+ii*nr_of_fields+nr_of_fields, current_data.begin());
659
			write_data_line_binary(current_data, fout);
660
		}
661

662
663
664
		file_is_binary = false;
	}

665
	fout.close();
666
667
}

668
669
670
void SMETWriter::print_if_exists(const std::string& header_field, std::ofstream& fout) const
{
	const std::map<string,string>::const_iterator it = header.find(header_field);
671
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677
	if (it != header.end()) {
		const std::ios_base::fmtflags flags = fout.setf(std::ios::left);
		const std::streamsize width = fout.width(16);
		fout << header_field << " = " << it->second << "\n";
		fout.width(width);
		fout.setf(flags);
	}
678
679
}

680
void SMETWriter::write_header(std::ofstream& fout)
681
{
682
683
	if (!valid_header()) {
		fout.close();
684
		throw SMETException("The header data you supplied is not valid, file \""+filename+"\" cannot be written", SMET_AT);
685
	}
686

687
688
689
690
	//write signature
	fout << "SMET " << SMETCommon::smet_version << " ";
	if (smet_type == ASCII) fout << "ASCII" << "\n";
	else fout << "BINARY" << "\n";
691

692
	fout << "[HEADER]" << "\n";
693
694
	print_if_exists("station_id", fout);
	print_if_exists("station_name", fout);
695
696
697

	if (location_in_header){
		if (location_wgs84 == 7){
698
699
700
			print_if_exists("latitude", fout);
			print_if_exists("longitude", fout);
			print_if_exists("altitude", fout);
701
702
703
		}

		if (location_epsg == 15){
704
705
			print_if_exists("easting", fout);
			print_if_exists("northing", fout);
706
			if (location_wgs84 != 7)
707
708
				print_if_exists("altitude", fout);
			print_if_exists("epsg", fout);
709
710
711
		}
	} else {
		if (location_in_data_epsg)
712
			print_if_exists("epsg", fout);
713
714
	}

715
	print_if_exists("nodata", fout);
716

717
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719
720
721
722
	print_if_exists("tz", fout);
	print_if_exists("creation", fout);
	print_if_exists("source", fout);
	print_if_exists("units_offset", fout);
	print_if_exists("units_multiplier", fout);
	print_if_exists("comment", fout);
723

724
	for (size_t ii=0; ii<other_header_keys.size(); ii++){
725
		fout << std::left << std::setw(16) << other_header_keys[ii] << " = " << header[other_header_keys[ii]] << "\n";
726
727
	}

728
	print_if_exists("fields", fout);
729
730
731
	fout << "[DATA]" << endl;
}

732
void SMETWriter::write_data_line_binary(const std::vector<double>& data, std::ofstream& fout)
733
734
735
736
737
{
	const char eoln = '\n';

	if (!file_is_binary){ //open it as binary file
		fout.close();
738
		errno = 0;
739
		fout.open(filename.c_str(), ios::out | ios::app | ios::binary); //reopen as binary file
740
		if (fout.fail()) {
741
			ostringstream ss;
742
743
744
			ss << "Error writing to file \"" << filename << "\", possible reason: " << strerror(errno);
			throw SMETException(ss.str(), SMET_AT);
		}
745
746
747
748
749
750

		file_is_binary = true;
	}

	for (size_t ii = 0; ii < data.size(); ii++){
		if (julian_present && (julian_field == ii)){
751
			const double julian = data[ii];
752
753
			fout.write((char*)&julian, sizeof(double)); //the julian date is written in 64bit IEEE754 precision
		} else {
754
			const float val = (float)data[ii];
755
756
757
758
759
760
761
			fout.write((char*)&val, sizeof(float)); //normal data fields are written in 32bit IEEE754 precision
		}
	}

	fout.write((char*)&eoln, sizeof(char));
}

762
void SMETWriter::write_data_line_ascii(const std::string& timestamp, const std::vector<double>& data, std::ofstream& fout)
763
764
765
766
767
{
	fout.fill(' ');
	fout << right;
	fout << fixed;

768
	if ((data.empty()) && timestamp_present) fout << timestamp;
769
770
771
772
773
774
775
776

	for (size_t ii = 0; ii < data.size(); ii++){
		if (ii > 0) fout << " ";
		if (timestamp_present && (timestamp_field == ii))	fout << timestamp << " ";
		fout << setw(ascii_width[ii]) << setprecision(ascii_precision[ii]);
		if (data[ii] == nodata_value) fout << nodata_string; //to have a nicer representation
		else fout << data[ii];
	}
777
	fout << "\n";
778
779
780
781
}

void SMETWriter::check_formatting()
{
782
	const size_t nr_of_data_fields = (timestamp_present)? nr_of_fields-1 : nr_of_fields;
783
784
785
786
787
788
789
790
791
792
793
794

	if ((ascii_precision.size() != nr_of_data_fields) || (ascii_width.size() != nr_of_data_fields)){
		ascii_precision.resize(nr_of_data_fields, 3);
		ascii_width.resize(nr_of_data_fields, 8);
	}

	if (julian_present){
		ascii_precision[julian_field] = 8;
		ascii_width[julian_field] = 16;
	}
}

795
void SMETWriter::set_width(const std::vector<int>& vec_width)
796
797
798
799
{
	ascii_width = vec_width;
}

800
void SMETWriter::set_precision(const std::vector<int>& vec_precision)
801
802
803
804
{
	ascii_precision = vec_precision;
}

805
806
807

////////////////////////////////////////////////////////////
//// SMETReader class
808
809
const size_t SMETReader::streampos_every_n_lines = 2000; //save streampos every 2000 lines of data

810
811
812
813
814
815
816
817
818
819
820
SMETReader::SMETReader(const std::string& in_fname)
            : data_start_fpointer(), vec_offset(), vec_multiplier(), vec_fieldnames(),
              header(), indexer(),
              filename(in_fname), timestamp_start("-4714-11-24T00:00"),
              timestamp_end("9999-12-31T00:00"), nodata_value(-999.),
              julian_start(0.), julian_end(5373483.5),
              nr_of_fields(0), timestamp_field(0), julian_field(0),
              location_wgs84(0), location_epsg(0), location_data_wgs84(0), location_data_epsg(0),
              eoln('\n'),
              timestamp_present(false), julian_present(false), isAscii(true), mksa(true),
              timestamp_interval(false), julian_interval(false)
821
822
{
	std::ifstream fin; //Input file streams
823
	if (!SMETCommon::fileExists(filename)) throw SMETException("File '"+filename+"' does not exists", AT); //prevent invalid filenames
824
	errno = 0;
825
	fin.open (filename.c_str(), ios::in|ios::binary); //ascii does end of line translation, which messes up the pointer code
826
	if (fin.fail()) {
827
		ostringstream ss;
828
		ss << "Error opening file \"" << filename << "\" for reading, possible reason: " << strerror(errno);
829
830
831
		ss << " Please check file existence and permissions!";
		throw SMETException(ss.str(), SMET_AT);
	}
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857

	try {
		eoln = SMETCommon::getEoln(fin); //get the end of line character for the file
		read_header(fin);
		process_header();
	} catch(...){
		cleanup(fin); //closes file
		throw;
	}
	cleanup(fin); //closes file
}

void SMETReader::cleanup(std::ifstream& fin) throw()
{
	if (fin.is_open()) //close fin if open
		fin.close();
}

void SMETReader::convert_to_MKSA(const bool& in_mksa)
{
	mksa = in_mksa;
}

std::string SMETReader::get_field_name(const size_t& nr_of_field)
{
	if (nr_of_field < nr_of_fields){
858
		return vec_fieldnames[nr_of_field];
859
	} else {
860
		ostringstream ss;
861
862
863
		ss << "Trying to access field #" << nr_of_field << " (starting from 0) of " << nr_of_fields << " fields in file \"" << filename << "\". ";
		ss << "This is out of bounds!";
		throw SMETException(ss.str(), SMET_AT);
864
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866
867
868
869
870
871
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873
874
875
876
877
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880
881
882
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886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
	}
}

size_t SMETReader::get_nr_of_fields() const
{
	return nr_of_fields;
}

void SMETReader::get_units_conversion(std::vector<double>& offset, std::vector<double>& multiplier) const
{
	multiplier = vec_multiplier;
	offset = vec_offset;
}

bool SMETReader::location_in_header(const LocationType& type) const
{
	if ((location_epsg == 15) && (type == EPSG)){
		return true;
	} else if ((location_wgs84 == 7) && (type == WGS84)){
		return true;
	}

	return false;
}

bool SMETReader::location_in_data(const LocationType& type) const
{
	if ((location_epsg == 8) && (location_data_epsg == 7) && (type == EPSG)){
		return true;
	} else if ((location_data_wgs84 == 7) && (type == WGS84)){
		return true;
	}

	return false;
}

void SMETReader::process_header()
{
	vector<string> tmp_vec;
	set<string> obligatory_keys;
904
	for (map<string,string>::iterator it = header.begin(); it != header.end(); ++it){
905
906
		if (SMETCommon::all_mandatory_header_keys.find(it->first) != SMETCommon::all_mandatory_header_keys.end())
			obligatory_keys.insert(it->first);
907

908
909
		if (it->first == "fields"){
			SMETCommon::readLineToVec(it->second, tmp_vec);
910
			string newfields;
911
			if (!tmp_vec.empty()){
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
				for (size_t ii=0; ii<tmp_vec.size(); ii++){
					if (tmp_vec[ii] == "timestamp"){
						timestamp_present = true;
						timestamp_field = ii;
					} else {
						if (nr_of_fields > 0) newfields += " ";
						vec_fieldnames.push_back(tmp_vec[ii]);
						newfields += tmp_vec[ii];
						nr_of_fields++;
					}

					if (tmp_vec[ii] == "julian"){
						julian_present = true;
						julian_field = ii;
					}
927

928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
					//Using WGS_84 coordinate system
					if (tmp_vec[ii] == "latitude")  location_data_wgs84 |= 1;
					else if (tmp_vec[ii] == "longitude") location_data_wgs84 |= 2;
					else if (tmp_vec[ii] == "altitude")  location_data_wgs84 |= 4;

					//Using an EPSG coordinate system
					if (tmp_vec[ii] == "easting")  location_data_epsg |= 1;
					else if (tmp_vec[ii] == "northing") location_data_epsg |= 2;
					else if (tmp_vec[ii] == "altitude") location_data_epsg |= 4;
				}
				it->second = newfields;
			}
		}

		if (it->first == "nodata")
			nodata_value = SMETCommon::convert_to_double(it->second);

		//Using WGS_84 coordinate system
		if (it->first == "latitude")  location_wgs84 |= 1;
		else if (it->first == "longitude") location_wgs84 |= 2;
		else if (it->first == "altitude")  location_wgs84 |= 4;

		//Using an EPSG coordinate system
		if (it->first == "easting")  location_epsg |= 1;
		else if (it->first == "northing") location_epsg |= 2;
		else if (it->first == "altitude") location_epsg |= 4;
		else if (it->first == "epsg")     location_epsg |= 8;

956
957
958
		//Now do a value check on EPSG
		if (it->first == "epsg")
			SMETCommon::convert_to_int(it->second);
959
960
961
962
	}

	if (get_header_value("units_offset") != ""){
		vector<string> tmp_offset;
963
		string offsetstring;
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
		SMETCommon::readLineToVec(get_header_value("units_offset"), tmp_offset);

		for (size_t ii=0; ii<tmp_offset.size(); ii++){
			if (!timestamp_present || (ii != timestamp_field)){
				if (ii>0) offsetstring += " ";
				offsetstring += tmp_offset[ii];
				vec_offset.push_back(SMETCommon::convert_to_double(tmp_offset[ii]));
			}
		}
		header["units_offset"] = offsetstring;
	} else {
		vec_offset.resize(nr_of_fields, 0.0);
	}

	if (get_header_value("units_multiplier") != ""){
		vector<string> tmp_multiplier;
980
		string multiplierstring;
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
		SMETCommon::readLineToVec(get_header_value("units_multiplier"), tmp_multiplier);

		for (size_t ii=0; ii<tmp_multiplier.size(); ii++){
			if (!timestamp_present || (ii != timestamp_field)){
				if (ii>0) multiplierstring += " ";
				multiplierstring += tmp_multiplier[ii];
				vec_multiplier.push_back(SMETCommon::convert_to_double(tmp_multiplier[ii]));
			}
		}
		header["units_multiplier"] = multiplierstring;
	} else {
		vec_multiplier.resize(nr_of_fields, 1.0);
	}

	if (obligatory_keys.size() != SMETCommon::all_mandatory_header_keys.size())
996
		throw SMETException("\""+filename+"\" is not a valid SMET file, mandatory information in header is missing", SMET_AT);
997

998
999
1000
	const bool location_meta_present = (location_wgs84 == 7) || (location_epsg == 15) || (location_data_wgs84 == 7)
	    || ((location_epsg == 8) && (location_data_epsg == 7));
	if (!location_meta_present) {
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